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Mendoza-Parra, M.A., Van Gool, W., Saleem, M.A.M., Ceschin, D.G. and Gronemeyer, H., 2013. A quality control system for profiles obtained by ChIP sequencing. Nucleic acids research, 41(21), pp.e196-e196.

Mendoza-Parra, M.A. and Gronemeyer, H., 2014. Assessing quality standards for ChIP-seq and related massive parallel sequencing-generated datasets: When rating goes beyond avoiding the crisis. Genomics data, 2, pp.268-273.

Mendoza-Parra, M.A., Saleem, M.A.M., Blum, M., Cholley, P.E. and Gronemeyer, H., 2016. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets. Statistical Genomics: Methods and Protocols, pp.243-265.

Mendoza-Parra, M.A., Saravaki, V., Cholley, P.E., Blum, M., Billoré, B. and Gronemeyer, H., 2016. Antibody performance in ChIP-sequencing assays: From quality scores of public data sets to quantitative certification. F1000Research, 5.

Mendoza-Parra, M.A., Blum, M., Malysheva, V., Cholley, P.E. and Gronemeyer, H., 2016. LOGIQA: a database dedicated to long-range genome interactions quality assessment. BMC genomics, 17(1), p.1.

Mendoza-Parra, M.A., Malysheva, V., Saleem, M.A.M., Lieb, M., Godel, A. and Gronemeyer, H., 2016. Reconstructed cell fate-regulatory programs in stem cells reveal hierarchies and key factors of neurogenesis. Genome Research, pp.gr-208926.

Malysheva, V., Mendoza-Parra, M.A., Saleem, M.A.M. and Gronemeyer, H., 2016. Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis. Genome medicine, 8(1), p.1.