Long-range genome interactions quality assessment

LOGIQA is a database hosting local and global quality scores assessed over long-range interaction assays (e.g. Hi-C).
Based on the concept applied by the NGS-QC Generator over ChIP-seq and related datasets, LOGIQA infers quality indicators by the comparison of multiple sequence reads random sampling assays.

LOGIQA has been published in BMC Genomics.

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Hi-C specific.
ChiA-PET specific.

Interaction map

Click the sign to expand a row and display more information on the experiment.
Click the button to select the corresponding experiment to be explored.

Organism Protocol Sample PET / TMR QC value Score (5kb)